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Table 2 FDR 25% WBC IVF-DMRs

From: DNA methylation changes at infertility genes in newborn twins conceived by in vitro fertilisation

Chromosome Start End P FDR adjusted P P (adjusted for maternal age) Gene namea Gene starta Gene enda
Chr2 217726751 217727250 2.30E-09 0.0221 6.40E-10 AC007557.1 217735495 217736362
TNP1 217724181 217724787
Chr5 178761751 178762250 5.43E-08 0.1244 1.76E-05 ADAMTS2 178537852 178772431
Chr9 97504001 97504500 5.83E-08 0.1244 5.14E-07 C9orf3 97488983 97849441
Chr5 9275751 9276250 5.86E-08 0.1244 1.67E-06 SEMA5A 9035138 9546187
Chr4 184814001 184814500 7.95E-08 0.1244 4.96E-07 STOX2 184774584 184944679
Chr5 142488501 142489000 8.73E-08 0.1244 5.76E-07 ARHGAP26 142149949 142608576
Chr9 118148751 118149250 9.20E-08 0.1244 4.61E-06 DEC1 117904097 118164923
Chr9 118149001 118149500 1.04E-07 0.1244 3.47E-06 DEC1 117904097 118164923
Chr11 82654251 82654750 1.30E-07 0.1250 5.26E-08 C11orf82 82611017 82669319
PRCP 82534544 82681626
RAB30 82684175 82782965
Chr19 6165251 6165750 1.40E-07 0.1250 1.00E-06 RFX2 5993175 6199583
ACSBG2 6135258 6193112
MLLT1 6212966 6279959
Chr1 85522251 85522750 1.43E-07 0.1250 2.56E-07 WDR63 85464830 85598821
MCOLN3 85483765 85514182
Chr17 42569001 42569500 1.64E-07 0.1274 1.90E-05 GPATCH8 42472652 42580798
Chr4 141606501 141607000 2.03E-07 0.1274 1.59E-05 TBC1D9 141541919 141677274
Chr5 137736001 137736500 2.06E-07 0.1274 1.13E-06 REEP2 137774706 137782658
KDM3B 137688285 137772717
Chr5 150614501 150615000 2.14E-07 0.1274 2.23E-07 SLC36A3 150656323 150683327
GM2A 150591711 150650001
CCDC69 150560613 150603706
Chr17 36918251 36918750 2.32E-07 0.1274 2.02E-07 MLLT6 36861795 36886056
CISD3 36886488 36891297
CWC25 36956687 36981734
PIP4K2B 36921942 36956379
PCGF2 36890150 36906070
CTB-58E17.5 36905613 36906969
PSMB3 36908989 36920484
AC006449.1 36884086 36884451
Chr6 126138251 126138750 2.36E-07 0.1274 2.12E-06 NCOA7 126102307 126252266
Chr7 144431251 144431750 2.70E-07 0.1274 5.29E-09 TPK1 144149034 144533488
Chr12 70937251 70937750 2.76E-07 0.1274 1.83E-06 PTPRB 70910630 71031220
Chr4 141606251 141606750 2.80E-07 0.1274 1.50E-05 TBC1D9 141541919 141677274
Chr13 90019001 90019500 2.84E-07 0.1274 5.94E-07 - - -
Chr11 74179001 74179500 2.92E-07 0.1274 1.61E-09 LIPT2 74202757 74204778
POLD3 74204896 74380162
KCNE3 74165886 74178774
Chr12 99153001 99153500 3.93E-07 0.1637 2.44E-07 ANKS1B 99120235 100378432
APAF1 99038919 99129204
Chr2 223336751 223337250 4.47E-07 0.1788 2.00E-06 SGPP2 223289236 223425667
Chr8 120972001 120972500 4.98E-07 0.1869 3.26E-08 DEPTOR 120885957 121063152
Chr17 38047001 38047500 5.25E-07 0.1869 7.83E-06 GSDMB 38060848 38076107
ZPBP2 38024417 38034149
IKZF3 37921198 38020441
ORMDL3 38077294 38083854
Chr4 64626751 64627250 5.45E-07 0.1869 2.67E-06 - - -
Chr16 87256751 87257250 5.51E-07 0.1869 2.12E-08 C16orf95 87117168 87351022
Chr19 10656751 10657250 5.77E-07 0.1869 1.42E-06 CDKN2D 10677138 10679735
ATG4D 10654571 10664094
KEAP1 10596796 10614417
AP1M2 10683347 10697991
KRI1 10663761 10676713
S1PR5 10623623 10628607
Chr7 2487251 2487750 5.85E-07 0.1869 2.03E-05 CHST12 2443223 2474242
Chr11 74178751 74179250 6.82E-07 0.2059 1.31E-07 KCNE3 74165886 74178774
LIPT2 74202757 74204778
POLD3 74204896 74380162
Chr10 119176501 119177000 6.87E-07 0.2059 1.11E-06 PDZD8 119040000 119134978
Chr22 34755251 34755750 7.32E-07 0.2094 1.76E-05 - - -
Chr6 161664751 161665250 7.42E-07 0.2094 2.93E-06 AGPAT4 161551011 161695093
Chr16 17161751 17162250 7.80E-07 0.2137 2.41E-06 XYLT1 17195626 17564738
Chr18 23695001 23695500 8.39E-07 0.2235 1.97E-06 PSMA8 23713816 23773319
SS18 23596578 23671181
Chr9 26364751 26365250 8.90E-07 0.2267 1.02E-06 - - -
Chr1 25227001 25227500 9.05E-07 0.2267 1.61E-05 RUNX3 25226002 25291612
Chr13 68877251 68877750 9.43E-07 0.2267 2.19E-05 - - -
Chr9 89126501 89127000 9.59E-07 0.2267 7.00E-06 - - -
Chr13 35317501 35318000 9.72E-07 0.2267 2.51E-05 - - -
Chr21 19575001 19575500 9.92E-07 0.2267 2.31E-06 CHODL 19273580 19639690
Chr2 169470001 169470500 1.06E-06 0.2307 4.35E-07 CERS6 169312372 169631644
Chr12 4310251 4310750 1.06E-06 0.2307 8.13E-05 - - -
Chr6 157136501 157137000 1.15E-06 0.2448 1.61E-06 ARID1B 157099063 157531913
Chr14 104067251 104067750 1.17E-06 0.2448 8.21E-06 APOPT1 104029299 104073860
BAG5 104022881 104029168
KLC1 104028233 104167888
RP11-73 M18.2 104029299 104152261
  1. aFrom GENCODE v19