Table 1 Datasets included in this study
Dataset label | Tissue | Phenotypes of interest | References | GEO accession |
|---|---|---|---|---|
Milano | Diffuse skin | Inflammatory subset, proliferative subset | Milano et al. [11] | GSE9285 |
Pendergrass | Diffuse skin | Inflammatory subset, proliferative subset | Pendergrass et al. [12] | GSE32413 |
Hinchcliff | Diffuse skin | Inflammatory subset, proliferative subset | Hinchcliff et al. [13] Mahoney et al. [17] | GSE45485, GSE59785 |
LSSc | Limited skin | NA | Present study | GSE76806 |
UCL | Limited skin | NA | Present study | GSE76807 |
Christmann | Lung | SSc-PF | Christmann et al. [14] | GSE76808 |
Bostwick | Lung | SSc-PF, IPF, IPAH, SSc-PAH | Hsu et al. [15] | GSE48149 |
ESO | Esophagus | Inflammatory subset, proliferative subset, SSc-PAH | Taroni et al. [16] | GSE68698 |
PBMC | PBMC | SSc-PAH | Pendergrass et al. [19] | GSE19617 |
Risbano | PBMC | IPAH, SSc-PAH | Risbano et al. [20] | GSE22356 |