Skip to main content

Table 3 User roles

From: PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories

Role

Description

ROLE_ADMIN

• Full system access

• Create and remove users

• Assign user roles

ROLE_DEV

• Same rights as ROLE_ADMIN except,

• Patient names and DOBs are suppressed on screen and in reporting

• Additional diagnostics are available within all environments (including Production)

ROLE_CURATOR

• The curators can create variant evidence

• Assign the pathogenicity for curated variants.

• If all checks pass they can lock a sample into the final review state

• Produce final reports

ROLE_LAB

• The user can update the Seqrun QC

• Update Sample QC

• Submit variants for curation

• Submit a sample for first review

• Produce draft reports

ROLE_EXPERT

The user has the same access as a curator but can subscribe to certain curation categories of interest such as genes, variants or patients

ROLE_VIEWER

The user only has access to the splash page and the reference tables

  1. PathOS supports multiple roles for access control and workflow