Fig. 3

Copy number class 1. Copy number plots from an LGD and SCC sample from the same patient. The x-axis shows genomic position and the y-axis shows copy number ratio. Red dots indicate a ratio above 1 (gain) while blue dots indicate a ratio below 1 (loss). Some genomic events (vertical red lines) are shared between samples, while some (blue vertical lines) are unique to each sample. On the right are high-resolution histology images of the respective samples