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Table 2 Novel promoters and coding first exon coordinates

From: Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability

Human

hg18a

hg19

hg38a

HPin7

Chr11:84107722-84110266

Chr11:84430074-84432618

Chr11:84719031-84721575

HPin8

Chr11:83825494-83826799

Chr11:84147846-84149151

Chr11:84436803-84438108

CFEin7 coding region

Chr11:84108987-84109049

Chr11:84431339-84431401

Chr11:84720296-84720358

CFEin8 coding region

Chr11:83826079-83826156

Chr11:84148431-84148508

Chr11:84437388-84437465

Mouse

mm9a

mm10

mHPin1

Chr7:98410804-98411661

Chr7:91262294-91263151

mHPin2

Chr7:98691323-98692132

Chr7:91542813-91543622

mCFEin1 coding region

Chr7:98411443-98411505

Chr7:91262933-91262995

mCFEin2 coding region

Chr7:98691624-98691701

Chr7:91543114-91543191

  1. Genomic coordinates of the novel functional regions found the human DLG2 and mouse Dlg2 genes. We investigated their location in hg19 and mm10, respectively. Their corresponding location in other genome references were retrieved by means of the UCSC liftOver tool. In DLG2, we name HPin7 and HPin8 the H3K4me3 peak found in introns 7 and 8, respectively. Inside HPin7 and HPin8 we discovered a protein-coding exon. We identify the coding part of the human exons as CFEin7 (inside HPin7) and CFEin8 (inside HPin8). In mouse, we name the orthologous H3K4me3 peak regions mHPin1 and mHPin2, as they are located in the first and second introns of the Dlg2 gene. We identify the coding part of the mouse exons as mCFEin1 (inside HPin1) and mCFEin2 (inside HPin2)
  2. aGenomic locations retrieved using the UCSC liftOver tool