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Fig. 3 | Genome Medicine

Fig. 3

From: A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

Fig. 3

R. gnavus metagenomic strain phylogeny. A phylogenetic tree of R. gnavus strains, calculated from SNP profiles of R. gnavus marker genes (see “Methods”), where each tree leaf is a sample from the LSS or Lewis et al. cohorts (subject plus time point). Subject SKST012 is the only included control individual, as no other control metagenomes contained enough R. gnavus reads for detection and strain assignment by StrainPhlAn. Bootstrap values are indicated on branches and reveal two distinct clades of R. gnavus strains

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