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Fig. 5 | Genome Medicine

Fig. 5

From: Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists

Fig. 5

Comparison of DE genes identified by Granatum or ASAP pipeline. a MA plot. Blue color labels DE genes, and gray dots are non-DE genes. b Venn diagram showing the number of DE genes identified by both methods, as well as those uniquely identified by either pipeline. c Bar chart comparing the number of genes up regulated in primary cells (red) or metastasized cells (green). d Bubble plots of KEGG pathway GSEA results for the DE genes identified by either pipeline. The y-axis represents the enrichment score of the gene sets, the x-axis shows gene set names, and the size of the bubble indicates the number of genes in that gene set

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