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Table 2 Top 20 differentially methylated positions between RA twins and non-RA twins. Probe names are shown, along with methylation levels, intra-pair methylation difference, unadjusted p value and probe annotation

From: Increased DNA methylation variability in rheumatoid arthritis-discordant monozygotic twins

Probe

Non-RA beta

RA beta

Diff

p value

Chr

Relationship to gene

Gene symbol

cg26547058

0.763

0.800

0.037

4.89E−07

8

  

cg07693617

0.758

0.788

0.030

5.15E−07

1

Body

PRKCZ

cg07636225

0.849

0.867

0.018

9.33E−07

11

Body

RTN3

cg03517226

0.709

0.716

0.007

1.18E−06

16

5′UTR

ANKRD11

cg20666386

0.184

0.180

−0.004

1.89E−06

11

1stExon

DGKZ

cg17501210

0.766

0.740

−0.026

2.54E−06

6

Body

RPS6KA2

cg26964117

0.775

0.796

0.021

2.56E−06

19

Body

PIH1D1

cg26701826

0.396

0.419

0.023

2.71E−06

4

5′UTR

SGMS2

cg06040872

0.810

0.822

0.012

2.92E−06

17

Body

CCL18

cg25487804

0.867

0.876

0.009

3.38E−06

11

TSS1500

OSBPL5

cg06128521

0.900

0.905

0.005

3.56E−06

17

  

cg16640599

0.421

0.447

0.026

3.58E−06

4

Body

SEC24D

cg02445229

0.719

0.737

0.018

3.85E−06

19

  

cg01769457

0.039

0.043

0.004

3.90E−06

1

  

cg15293582

0.704

0.703

−0.001

4.06E−06

10

TSS1500

PRF1

cg07090025

0.091

0.100

0.009

4.21E−06

1

TSS200

SSU72

cg06791979

0.795

0.799

0.004

4.44E−06

11

Body

RTN3

cg01934296

0.939

0.931

−0.008

4.45E−06

1

Body

 

cg26272088

0.819

0.838

0.019

4.54E−06

19

Body

IRGC

cg18460107

0.674

0.679

0.005

4.71E−06

17

TSS200

SEPT9

  1. Chr chromosome