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Fig. 4 | Genome Medicine

Fig. 4

From: Next Generation-Targeted Amplicon Sequencing (NG-TAS): an optimised protocol and computational pipeline for cost-effective profiling of circulating tumour DNA

Fig. 4

Mutation calling in NA12878 cfDNA dilution series. a Schematic overview of the computational pipeline to identify somatic mutations in NG-TAS data. b De novo mutation calling in the NA12878 dilution series was evaluated for different amounts of input cfDNA. Four SNVs can potentially be called using our panel of 377 amplicons. c VAF for all FP calls in the NA12878 dilution series. The red dashed line represents 5% VAF

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