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Table 2 Cancer-testis antigens covered by HLA ligands detected in HCC

From: Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma

#

CTA (UniprotID)

Peptide (HLA-)

Sample ID HCC-

1

ARMC3 (Q5W041)

EQIEDLAKY (A*26:01)

045

2

ATAD2 (Q6PL18)

AYAIIKEEL (A*24:02)

AEFRTNKTL (B*44:03)

023

045

3

MAEL (Q96JY0)

MVVLDAGRY (A*26:01)

045

4

PRAME (P78395)

SLLQHLIGL (B*08:01)

041

5

SSX1 (Q16384)

AFDDIATYF (C*04:01)

035

6

SSX

RLRERKQLV (B*08:01)

041

7

TFDP3 (Q5H9I0)

EVVGELVAKF (A*26:01)

045

  1. Peptide maps to SSX1 (Q16384); SSX2 (Q16385); SSX3 (Q99909); SSX4 (O60224); SSX6 (Q7RTT6); SSX7 (Q7RTT5); SSX9 (Q7RTT3)