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Table 2 Notable AMR STs by location

From: Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia

Location

Total ESBL (%)

Total CP (%)

Notable clone/s

N

N ESBL (% of ESBL/site)

ESBL genes (N)

N CP (% of CP/site)

CP genes (N)

Hong Kong

5 (19%)

0

Vietnam

20 (25%)

4 (5%)

* ST15

7

4 (20%)

CTX-M-15 (3)

CTX-M-14 (2)

2 (50%)

NDM-1 (1)

Thailand

2 (50%)

0

Laos

32 (53%)

1 (2%)

* ST15

14

14 (44%)

CTX-M-15 (14)

0

ST76-1LV

4

4 (13%)

CTX-M-15 (4)

0

Cambodia

27 (64%)

1 (2%)

ST20

5

5 (19%)

CTX-M-27 (3)

CTX-M-14 (2)

CTX-M-15 (1)

0

* ST15

3

3 (11%)

CTX-M-15 (3)

CTX-M-27 (1)

0

ST36

3

3 (11%)

CTX-M-15 (2)

0

* ST15

8

8 (33%)

CTX-M-15 (8)

6 (67%)

NDM-1 (5)

Nepal

24 (75%)

9 (28%)

ST4

5

5 (21%)

CTX-M-15 (5)

0

ST11

3

3 (13%)

SFO-1 (3)

3 (33%)

OXA-232 (3)

India

52 (61%)

42 (49%)

ST231

17

13 (25%)

CTX-M-15 (13)

13 (31%)

OXA-232 (13)

ST14

16

7 (13%)

CTX-M-15 (7)

11 (26%)

OXA-232 (10)

* ST15

4

3 (6%)

CTX-M-15 (3)

0

ST16

3

3 (6%)

CTX-M-15 (3)

2 (5%)

NDM-1 (1)

ST29

3

3 (6%)

CTX-M-15 (3)

0

ST395

3

1 (25%)

CTX-M-15 (1)

3 (7%)

OXA-232 (3)

  1. Total ESBL and Total CP: total number of genomes carrying ESBL and carbapenemase genes per site, respectively
  2. Notable clones: clones with ≥ 3 ESBL and/or carbapenemase gene-positive genomes at any single site. *ST15 is the only clone meeting these criteria at > 1 site
  3. N: total number of genomes of each notable clone at each site (includes all genomes assigned to the ST regardless of predicted AMR)
  4. N ESBL: number of genomes of each notable clone with at least one ESBL and no carbapenemase genes per site
  5. ESBL genes: details of the ESBL genes detected in each notable clone at each site
  6. N CP: number of genomes of each notable clone with at least one carbapenemase gene per site
  7. CP genes: details of the carbapenemase genes detected in each notable clone at each site