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Table 1 Metatranscriptomic sequencing data summary of eight SARS-CoV-2-positive clinical samples collected from Guangzhou in February 2020

From: Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

Sample ID Sample type Ct No. of sequencing read pairs No. of SARS-CoV-2 read pairs Percentage of SARS-CoV-2 read pairs Coverage (%) Depth (×)
GZMU0047 Nasal swab 18 1,547,648,648 85,316,930 5.513 100 113,021
GZMU0016 Sputum 21 1,578,573,142 7,489,563 0.474 99.96 12,734
GZMU0048 Throat swab 24 1,647,198,588 3,365,330 0.204 99.91 6508
GZMU0044 Nasal swab 26 1,609,367,415 7,275,402 0.452 99.92 12,758
GZMU0030 Throat swab 29 1,725,727,056 31,148 0.002 99.87 69
GZMU0014 Sputum 30 1,596,713,550 46,199 0.003 99.9 95
GZMU0042 Sputum 32 1,481,162,934 567,266 0.038 99.94 1133
GZMU0031 Anal swab 32 1,671,721,507 25,392 0.002 99.89 14