Skip to main content

Table 1 Speed comparison to KING. The extract step consists of conversion to a sketch for Somalier and of conversion to a plink binary bed file for KING. The relate step is the time spent measuring kinship between all pairs of samples. Times shown reflect the wall time required for completion

From: Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches

Step Somalier (wall time) KING/plink (wall time)
Extract 17 min 48 s 812 min 40 s
Relate 8 s 31 min 34 s