Table 1 Speed comparison to KING. The extract step consists of conversion to a sketch for Somalier and of conversion to a plink binary bed file for KING. The relate step is the time spent measuring kinship between all pairs of samples. Times shown reflect the wall time required for completion
Step | Somalier (wall time) | KING/plink (wall time) |
|---|---|---|
Extract | 17 min 48 s | 812 min 40 s |
Relate | 8 s | 31 min 34 s |