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Table 3 Frequency of R21X and LD with rs41272114 in the 1000Gph3v5 super populations

From: Investigation of a nonsense mutation located in the complex KIV-2 copy number variation region of apolipoprotein(a) in 10,910 individuals

 

Super population

AFR

AMR

EAS

EUR

SAS

All

 Individuals [n]

661

347

504

503

489

 Carriers [n]

0

3

1

12

9

 Carrier frequency

0

0.009

0.002

0.024

0.019

 LD rs41272114-R21X [D′/R2]

NA/NA

0.986/0.063

NA/NA

0.995/0.453

0.992/0.324

Coverage > 340×

 Individuals [n]

561

300

413

360

468

 Carriers [n]

0

3

0

10

9

 Carrier frequency

0

0.010

0

0.028

0.019

 LD rs41272114-R21X [D′/R2]

NA/NA

0.986/0.068

NA/NA

0.995/0.387

0.992/0.347

Coverage > 780×

 Individuals [n]

548

279

332

272

468

 Carriers [n]

0

3

0

7

9

 Carrier frequency

0

0.011

0

0.026

0.019

 LD rs41272114-R21X [D′/R2]

NA/NA

0.986/0.072

NA/NA

0.995/0.400

0.992/0.348

  1. A coverage > 380× corresponds to a high accuracy variant call with single direction sequencing (single-end sequencing). A coverage > 780× corresponds to a high accuracy variant call using bidirectional confirmation (paired-end sequencing) and provides the most accurate variant calls. The rationale for these cutoffs is explained in the “Methods” section of this manuscript
  2. Both the unfiltered data and the R21X carriers filtered for 340- and 780-fold coverage are shown
  3. AFR Africans, AMR Admixed Americans, EAS East Asians, EUR Europeans, SAS South Asians, LD linkage disequilibrium, n number