Table 1 Information on transcriptomes analyzed in this study
From: Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2
Source | Virus isolate (MOI) (details on stock generation) | Infection host | Timepoint | Accession or DOI | Technology |
|---|---|---|---|---|---|
Taiaroa et al. [7] | Australia/VIC01/2020 (MOI: Unknown) (Passage unknown) | Vero cells | Unknown | SRR11350376 | dRNAseq |
Kim et al. [8] | Korea/KCDC02/2020 (MOI: 0.05) (4th passage. No plaque isolation) | Vero cells | 24 hpi | dRNAseq | |
Davidson et al. [9] | England/VE6-T/2020 (MOI: Unknown) (2nd passage. No plaque isolation) | Vero cells | Unknown | 10.5281/zenodo.3722580 | dRNAseq |
Finkel et al. [10] | GISAID Acc. No. EPI_ISL_406862 (MOI: 0.2) (4th passage. No plaque isolation) | Vero cells | 5 hpi | SRR11713354 | Illumina PolyA |
Finkel et al. [10] | GISAID Acc. No. EPI_ISL_406862 (MOI: 0.2) (4th passage. No plaque isolation) | Vero cells | 24 hpi | SRR11713362 | Illumina PolyA |
Blanco-Melo et al. [11] | USA/WA1/2020 (MOI: 0.2) (Passage unknown) | A549-ACE2 cells | 24 hpi | SRR11517741 | Illumina PolyA |
Blanco-Melo et al. [11] | USA/WA1/2020 (5 × 104 PFU/ferret) (Passage unknown) | Ferret (Nasal washings) | 3 dpi | SRR11517855- SRR11517858 | Illumina PolyA |
Suzuki et al. [12] | SARS-CoV-2/Hu/DP/Kng/19-020 (5 × 104 PFU/100 organoids) (Passage unknown but plaque isolated) | Bronchial organoids | 5 dpi | SRR11811022 | Illumina PolyA |
Emanuel et al. [13] | Frankfurt strain AY310120.1 OR BetaCoV/Munich/BavPat1/2020|EPI_ISL_406862 (MOI: 0.33) (Passage unknown) | Calu3 | 4 hpi | SRR11550047 | Illumina Total RNA |
Emanuel et al. [13] | Frankfurl strain AY310120.1 OR BetaCoV/Munich/BavPat1/2020|EPI_ISL_406862 (MOI: 0.33) (Passage unknown) | Calu3 | 24 hpi | SRR11550045 | Illumina Total RNA |
Viehweger et al. [14] | CoV-229E (MOI: 3) (Passage unknown) | Huh7 cells | 24 hpi | ERR3460961 | dRNAseq |