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Table 1 Information on transcriptomes analyzed in this study

From: Pervasive generation of non-canonical subgenomic RNAs by SARS-CoV-2

Source Virus isolate (MOI)
(details on stock generation)
Infection host Timepoint Accession or DOI Technology
Taiaroa et al. [7] Australia/VIC01/2020 (MOI: Unknown)
(Passage unknown)
Vero cells Unknown SRR11350376 dRNAseq
Kim et al. [8] Korea/KCDC02/2020 (MOI: 0.05)
(4th passage. No plaque isolation)
Vero cells 24 hpi https://doi.org/10.17605/OSF.IO/8F6N9 dRNAseq
Davidson et al. [9] England/VE6-T/2020 (MOI: Unknown)
(2nd passage. No plaque isolation)
Vero cells Unknown 10.5281/zenodo.3722580 dRNAseq
Finkel et al. [10] GISAID Acc. No. EPI_ISL_406862 (MOI: 0.2)
(4th passage. No plaque isolation)
Vero cells 5 hpi SRR11713354 Illumina PolyA
Finkel et al. [10] GISAID Acc. No. EPI_ISL_406862 (MOI: 0.2)
(4th passage. No plaque isolation)
Vero cells 24 hpi SRR11713362 Illumina PolyA
Blanco-Melo et al. [11] USA/WA1/2020 (MOI: 0.2)
(Passage unknown)
A549-ACE2 cells 24 hpi SRR11517741 Illumina PolyA
Blanco-Melo et al. [11] USA/WA1/2020 (5 × 104 PFU/ferret)
(Passage unknown)
Ferret (Nasal washings) 3 dpi SRR11517855- SRR11517858 Illumina PolyA
Suzuki et al. [12] SARS-CoV-2/Hu/DP/Kng/19-020 (5 × 104 PFU/100 organoids)
(Passage unknown but plaque isolated)
Bronchial organoids 5 dpi SRR11811022 Illumina PolyA
Emanuel et al. [13] Frankfurt strain AY310120.1 OR BetaCoV/Munich/BavPat1/2020|EPI_ISL_406862 (MOI: 0.33)
(Passage unknown)
Calu3 4 hpi SRR11550047 Illumina Total RNA
Emanuel et al. [13] Frankfurl strain AY310120.1 OR BetaCoV/Munich/BavPat1/2020|EPI_ISL_406862 (MOI: 0.33)
(Passage unknown)
Calu3 24 hpi SRR11550045 Illumina Total RNA
Viehweger et al. [14] CoV-229E (MOI: 3)
(Passage unknown)
Huh7 cells 24 hpi ERR3460961 dRNAseq
  1. hpi hours post infection, dpi days post infection