Fig. 4

Core-genome-based tree generated by PopPUNK in 303 VRE isolates with an associated short-read assembly. For 225 isolates, we had complete metadata information (hospital and isolation date), hierBAPS SC, plasmid type, and Tn1546 assignments. The nodes of the core-genome tree corresponding to this subset of 225 isolates are colored based on their associated hierBAPS SC (n = 15). The plasmid type (n = 6) and Tn1546 variants (n = 14) assignments are plotted in two distinct and adjacent panels. Tn1546 variants were named following the ad hoc scheme shown in Table 3. This information can also be fully inspected interactively in the following Microreact project: https://microreact.org/project/FCUD_d1zt