Fig. 5

Plots of the numbers of somatically mutated, amplified, or deleted genes that were enriched in subtypes defined by different methods (adjusted p value of chi-squared test < 0.05) grouped by methods (a) or by cancer types (b). The p values above are the difference between DeClust and other methods according to the two-sided paired Wilcoxon rank-sum test based on the log-transformed counts or the original counts (in parenthesis). c The frequency of genetic alterations within each BLCA subtype defined by DeClust (left) or TCGA (right). Only genetic alterations that were enriched in either DeClust or TCGA subtypes in BLCA are included here (adjusted p value < 0.05). d Similarity between CRIS subtypes and subtypes derived from different methods for COADREAD (upper) and overlap between CRIS subtypes and DeClust subtypes (lower)