Skip to main content

Table 3 Summary of OncoGEMINI unique filtering of breast metastatic samples

From: OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations

Patient

Expected metastatic mutations

OncoGEMINI unique

Tool only

With filtersa

ER1

3

100

2

CTPS2 (D153E)

CTPS2 (D153E)

FGFR4 (N495K)

FGFR4 (N495K)

FGFR4 (N495K)

MGA (splice)

MGA (splice)

MGA (splice)

 

ER2

1

181

6

SPEN (E2151K)

SPEN (E2151K)

SPEN (E2151K)

ER3

0

4

0

TN1

0

17

0

  1. aRequires impact_severity ! = ‘LOW’ and the cgi_gene ! = “