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Table 2 Observed SARS-CoV-2 mutations in clinical samples

From: Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

Mutation

Gene / open reading frame

Translational change

Sample frequency

(n = 30)

Samples

GISAID frequency

n = 75,681)

2721 C>T

Nsp3

A1V

1

P145

7

3037 C>T

Nsp3

Synonymous

5

P133, P152, P128, P140,

P125

62,018

7482 C>T

Nsp3

S1588L

1

P162

10

8092 C>T

Nsp3

Synonymous

1

P145

42

8389 C>T

Nsp3

Synonymous

1

P133

154

11074 CT>C

NA

Microsatellite

3

P155, P128, P142

NA

16267 C>A

Helicase

Q11K

1

ATCC_WA-01

NA

16375 C>T

Helicase

P47S

1

P142

16

16876 A>G

Helicase

T214A

1

P132

0

17747 C>T

Helicase

P504L

1

P145

2104

17858 A>G

Helicase

Y541C

1

P145

2167

18060 C>T

3′ to 5′ exonuclease

Synonymous

2

ATCC_WA-01, P145

2233

18084 C>T

3′ to 5′ exonuclease

Synonymous

1

P126

4

21646 C>T

S

Synonymous

1

P151

257

22289 G>T

S

A243S

1

P152

15

23403 A>G

S

D614G

3

P152, P125, P133

61,993

26542 C>T

M

T7I

1

ATCC_WA-01

13

26625 C>T

M

Synonymous

1

P144

86

26951 G>T

M

Synonymous

1

P146

44

27131 C>T

M

Synonymous

1

P137

16

27641 C>T

ORF7a

S83L

1

P126

31

27670 G>T

ORF7a

V93F

1

P139

35

27874 C>T

ORF7b

T40I

2

P144, P146

40

27925 C>T

ORF8

T11I

1

P138

22

27970 C>T

ORF8

T26I

1

P132

66

28144 T>C

ORF8

L84S

2

P145, ATCC_WA-01

4655