Table 5 True CNVs detected in single-cell samples
From: Single-cell sequencing of the small and AT-skewed genome of malaria parasites
Sample name | CNV name | Start position | Size (bp) | Supporting reads | Start position | Size (bp) | Copy number detected by Ginkgo in different bin sizes | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Discordant read | Split read | 1 kb | 5 kb | 8 kb | 10 kb | ||||||
LOM 5 | Pfmdr1 | 891390 | 34,069 | 0 | 2 | 907000 | 28,000 | 9 | Nd | N/A | N/A |
LOM 16 | Pf11-1 | 1542335 | 3836 | 0 | 3 | 1543000 | 5000 | 3 | N/A | N/A | N/A |
EOM 23 | Pfmdr1 | 889899 | 79,890 | 3 | 3 | 888000 | 82,000 | 4 | 6 | 5 | 5 |
EOM 26 | Pf11-1 | 1542335 | 3836 | 0 | 5 | 1543000 | 5000 | 4 | N/A | N/A | N/A |
EOM 29 | Pf11-1 | 1539158 | 5639 | 4 | 0 | 1541000 | 7000 | 3 | N/A | N/A | N/A |