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Table 5 True CNVs detected in single-cell samples

From: Single-cell sequencing of the small and AT-skewed genome of malaria parasites

Sample name CNV name Start position Size (bp) Supporting reads Start position Size (bp) Copy number detected by Ginkgo in different bin sizes
Discordant read Split read 1 kb 5 kb 8 kb 10 kb
LOM 5 Pfmdr1 891390 34,069 0 2 907000 28,000 9 Nd N/A N/A
LOM 16 Pf11-1 1542335 3836 0 3 1543000 5000 3 N/A N/A N/A
EOM 23 Pfmdr1 889899 79,890 3 3 888000 82,000 4 6 5 5
EOM 26 Pf11-1 1542335 3836 0 5 1543000 5000 4 N/A N/A N/A
EOM 29 Pf11-1 1539158 5639 4 0 1541000 7000 3 N/A N/A N/A
  1. N/A indicates the target CNVs will not be detected as the bin size (≥ 5 bin size) is larger than the size of the target CNVs. Nd not detected in the specified bin size