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Table 6 SNP detection in sequenced samples

From: Single-cell sequencing of the small and AT-skewed genome of malaria parasites

Variant filtering conditions Sample name Number of SNPs Precision Sensitivity
VQSLOD > 0 EOM (13) 12,734 65.25% 45.09%
LOM (10) 12,730 67.16% 46.40%
ENM (1) 2269 84.93% 10.49%
LNM (1) 9235 67.29% 33.83%
Dd2 bulk (1) 18,369
COM (2) 8851 31.55% 15.22%
VQSLOD > 6 EOM (13) 6917 91.75% 46.22%
LOM (10) 6990 92.40% 47.05%
ENM (1) 1375 96.58% 9.68%
LNM (1) 4902 95.17% 33.99%
Dd2 bulk (1) 13,725
COM (2) 3162 66.69% 15.37%
VQSLOD > 6, read depth > 10 EOM (13) 3937 99.48% 29.74%
LOM (10) 4360 99.41% 32.92%
ENM (1) 252 97.62% 1.87%
LNM (1) 2575 98.87% 19.33%
Dd2 bulk (1) 13,168
COM (2) 1021 79.28% 6.13%
  1. *Precision and sensitivity are calculated by using SNPs detected in Dd2 bulk sample as the standard SNP set