|
Categories
|
Fields
|
Example
|
|---|
|
ID
|
Public name
|
GPS_ZA_0001
|
|
Geographical location
|
Country
|
South Africa
|
|
Region
|
Gauteng
|
|
City
|
Johannesburg
|
|
Facility where collected
|
Hospital A
|
|
Submitting institute
|
NICD
|
|
Time
|
Year
|
2010
|
|
Month
|
Aug
|
|
Clinical data
|
Gender
|
F
|
|
Age (years)
|
0
|
|
Age (months)
|
1
|
|
Age (days)
|
0
|
|
Clinical manifestation
|
Meningitis
|
|
Source
|
Cerebrospinal fluid
|
|
HIV status
|
Negative
|
|
Other underlying conditions
|
No
|
|
Microbiological data
|
Phenotypic serotype method
|
Quellung
|
|
Phenotypic serotype
|
19A
|
|
Multilocus sequence type
|
ST81
|
|
Antimicrobial susceptibilitya
|
Method
|
Broth dilution
|
|
Antimicrobial (e.g. penicillin)
|
2 mg/L
|
|
Selection
|
Random selection
|
Y
|
- aAntimicrobial susceptibility profile of 17 antimicrobials including penicillin, amoxicillin, cefotaxime, ceftriaxone, cefuroxime, meropenem, chloramphenicol, cotrimoxazole, erythromycin, clindamycin, linezolid, levofloxacin, ciprofloxacin, synercid, tetracycline, rifampin and vancomycin
