Skip to main content

Table 2 COLOC analysis output

From: An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility

Trait1

Trait2

Locus

SNP #

PP3

PP4

PP3 + PP4

PP4/PP3

Lead causal SNP

CXCL10 level after Chlamydia infection

Blood CXCL9 levels

CXCL10

1533

0.101

0.899

1.00

8.91

rs2869462

COVID-19

Plasma CD209 antigen level

ABO

56

0.0159

0.984

1.00

61.72

rs505922

COVID-19

Idiopathic pulmonary fibrosis

DPP9

1233

0.00216

0.994

0.996

459.63

rs12610495

  1. PP3 is the posterior probability for the model where the two traits have independent causal variants. PP4 is the posterior probability for the model where the two traits share a single causal variant