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Fig. 1 | Genome Medicine

Fig. 1

From: Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study

Fig. 1

Genomic content of isolates across the Klebsiella genus. A Core-genome phylogeny of the genus Klebsiella including isolates from K. pneumoniae (n = 218), K. quasipneumoniae (n = 83), “K. quasivariicola” (n = 5), K. variicola (n = 109), K. oxytoca (n = 41), K. michiganensis (n = 54), K. grimontii (n = 37) and K. huaxensis (n = 1) based on 1171 core genes. The species colour key is used throughout the figure and paper. B Pan- (upper) and core- (lower) gene accumulative curves comparing K. pneumoniae group and K. oxytoca group. C Number of plasmid replicons identified in each isolate, per species. Boxes indicate the IQR with the median displayed as middle lines. D Plasmid replicons identified by PlasmidFinder in all isolates (n = 548), shown per Klebsiella spp

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