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Fig. 3 | Genome Medicine

Fig. 3

From: Constructing germline research cohorts from the discarded reads of clinical tumor sequences

Fig. 3

Imputation accuracy for somatically deleted or amplified regions. a Table of the mean error and mean absolute error for each region type: 5% most somatically deleted regions; 5% of regions with the greatest copy neutral loss of heterozygosity (CN-LOH), neutral regions (not identified in any other group); and 5% most somatically amplified regions. For each entry, the standard error is reported in parentheses. b Histogram of the allelic imputation error between the array ground truth and the imputed dosage; − 1 reflects bias toward the major allele, and + 1 reflects bias toward the minor allele

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