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Table 1 Characteristics of participants included in the study

From: Genome-wide association studies identify novel genetic loci for epigenetic age acceleration among survivors of childhood cancer

Characteristics

SJLIFE1 survivors

No. (%)

SJLIFE2 survivors

No. (%)

Non-cancer controls

No. (%)

SJLIFE1 vs. SJLIFE2

P

Survivors vs. controls

P

Total

2138a

502

282

  

Sex

 Male

1132 (53.0)

267 (53.2)

137 (48.6)

0.17

0.19

 Female

1006 (47.0)

235 (46.8)

145 (51.4)

  

Ethnicity

 Hispanic

24 (1.1)

11 (2.2)

6 (2.1)

0.18

0.15

 Non-Hispanic

2114 (98.9)

491 (97.8)

276 (97.9)

  

Diagnosis

 Leukemia

731 (34.2)

176 (35.1)

   

  Acute lymphoblastic leukemia

671 (31.4)

159 (31.7)

–

  

  Acute myeloid leukemia

58 (2.7)

15 (3.0)

–

  

  Other leukemia

2 (0.1)

2 (0.4)

–

  

 Lymphoma

460 (21.5)

36 (7.2)

   

  Hodgkin lymphoma

296 (13.8)

11 (2.2)

–

  

  Non-Hodgkin lymphoma

164 (7.7)

25 (5.0)

–

  

 Sarcoma

283 (13.2)

39 (7.8)

–

  

  Ewing sarcoma

76 (3.6)

7 (1.4)

–

  

  Osteosarcoma

76 (3.6)

5 (1.0)

   

  Rhabdomyosarcoma

73 (3.4)

15 (3.0)

–

  

  Nonrhabdomyosarcoma

58 (2.7)

12 (2.4)

–

  

 CNS tumors

245 (11.5)

83 (16.5)

   

  Astrocytoma or glioma

113 (5.3)

41 (8.2)

–

  

  Medulloblastoma or PNET

59 (2.8)

15 (3.0)

–

  

  Ependymoma

27 (1.3)

8 (1.6)

–

  

  Other CNS tumors

46 (2.2)

19 (3.8)

–

  

 Embryonal

285 (13.3)

82 (16.3)

   

  Wilms tumor

140 (6.5)

32 (6.4)

–

  

  Neuroblastoma

109 (5.1)

39 (7.8)

–

  

  Germ cell tumor

36 (1.9)

11 (2.2)

–

  

 Other

134 (6.3)

86 (17.1)

   

  Retinoblastoma

50 (2.3)

67 (13.3)

–

  

  Hepatoblastoma

15 (0.7)

2 (0.4)

–

  

  Melanoma

13 (0.6)

4 (0.8)

–

  

  Carcinomas

24 (1.1)

3 (0.6)

–

  

  Others

32 (1.5)

10 (2.0)

–

  

Radiation

 Brain RT

666 (31.2)

147 (29.3)

–

  

 Chest RT

608 (28.4)

82 (16.3)

–

  

 Abdomen/pelvis RT

479 (22.4)

81 (16.1)

–

  

Chemotherapy

 Alkylating agent

1269 (59.4)

257 (51.2)

–

  

 Anthracyclines

1265 (59.2)

257 (51.2)

–

  

 Epipodophyllotoxins

762 (35.6)

166 (33.1)

–

  

 Glucocorticoids

1010 (47.2)

199 (39.6)

–

  

 Platinum

271 (12.7)

126 (25.1)

–

  

 Vincristine

1489 (69.6)

343 (68.3)

–

  

Median age at diagnosis, years (range)

7.3 (0.0, 23.6)

3.1 (0.0, 19.9)

NA

  

Median age at DNA sampling, years (range)

31.8 (6.0, 66.4)

16.5 (7.3, 66.6)

35.0 (18.7, 70.2)

<0.001

<0.001

  1. Abbreviations: SJLIFE1 survivors The first discovery data set of 2138 survivors included in our previously published study (ref. [6]), SJLIFE2 survivors The second discovery data set of 502 children and adolescent survivors, CNS Central nervous system, PNET Primitive neuroectodermal tumor, RT Radiotherapy
  2. aStarting from 2139 survivors included in our previous publication (ref. [6]), a retinoblastoma survivor failed the minfi QC with low total intensity and hence was excluded from this current analysis