Fig. 5

CTpathway accurately identifies well-known cancer risk pathways. a The comparison of identified pathways in four cancers for eight data sets. Gray color represents identified pathways across multiple cancer types (AC). Other colors represent cancer type-specific identified pathways. GT represents both GEO and TCGA data sets; TS and GS represent TCGA specific and GEO specific, respectively. For cancer type-specific identified pathways, the proportion of pathways for different data sets is shown as pie charts. b Heatmap of pathways identified for eight cancer data sets by CTpathway in eight pathway databases. The number of candidate pathways for each database is indicated in parentheses. c The bar graph shows the top 10 KEGG pathways