Datasets | |||
Cohort | Data type | Source | Reference |
TCGA LUSC | RNAseq, WES, CNV, RPPA (Level 4 data) | GDAC Firehose, TCPA Portal | |
TCGA LUAD | RNAseq | GDAC Firehose | [44] |
NCI-MD Cohort SqCC | RNAseq | This study; Gene Expression Omnibus, GSE201221 | Â |
UHN Cohort | Microarray | Gene Expression Omnibus, GSE50081 | [20] |
TCGA Pan-Cancer Cohort | RNAseq | https://gdc.cancer.gov/about-data/publications/pancanatlas with survival data from [45] | [45] |
SqCC cell types from scRNAseq | scRNAseq | Loom files and Signature Matrix | [46] |
Premalignant lesions | RNAseq | Gene Expression Omnibus GSE108124 | [7] |
Aging lung | RNAseq | Gene Expression Omnibus GSE165192 | [47] |
Data and signatures | |||
Data type | Data format | Source | Reference |
IPF fibrosis score | Expression Data | Manuscript | [48] |
IPF fibroblast phenotypes from scRNAseq | scRNAseq | Gene Expression Omnibus | [49] |
IPF cell types from scRNAseq | Signature matrix | Manuscript | [50] |
Lung cancer-specific immunological cell types | Gene Signatures | Manuscript | [51] |