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Table 1 Analyses performed and corresponding TCGA glioblastoma data sets

From: Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme

Primary analysis TCGA dataset(s)
Differentially expressed genes Gene expression
Differentially expressed transcripts (DETs) Exon expression
Differentially expressed miRNAs miRNA expression
Survival affecting germline SNPs Blood SNP arrays, clinical data
Survival affecting DETs Exon expression, clinical data
Survival affecting differentially expressed miRNAs miRNA expression, clinical data
Chromosomal aberrations (amplification and deletion) aCGH
Integration of differential expression and chromosomal aberrations aCGH, exon expression
DNA methylation Methylation arrays