Table 6 Top 10 differentially expressed genes in inflamed Crohn’s disease versus inflamed ulcerative colitis

Up-regulated lncRNAs

  FLJ42969

ENST00000514926.1

2.6

  AC007182.6

ENST00000455232.1

2.42

  RP11-542 M13.2

ENST00000599411.1

2.04

  RP11-399 F4.4

ENST00000453998.1

1.87

  FAM95B1

ENST00000455995.1

1.87

  RP3-395 M20.8

ENST00000432521.2

1.69

  RP3-395 M20.8

ENST00000448624.2

1.65

  OPLAH

ENST00000426825.1

1.61

  OPLAH

ENST00000534424.1

1.61

  SPPL2B

ENST00000592738.1

1.59

Down-regulated lncRNAs

  AL928742.12

ENST00000412518.1

-2.01

  RP11-444D3.1

ENST00000540811.1

-1.84

  AL928742.12

ENST00000427543.1

-1.8

  FAM25D

ENST00000426412.2

-1.69

  RP11-274 N19.2

ENST00000515643.1

-1.64

  RP11-838 N2.4

ENST00000579007.1

-1.59

  RP11-279 F6.3

ENST00000558941.1

-1.57

  RP11-279 F6.3

ENST00000559212.1

-1.55

  LINC00524

ENST00000555860.1

-1.54

  VAV3-AS1

ENST00000438318.1

-1.52

Up-regulated protein-coding genes

  C8G

NM_000606

2.75

  SLC25A34

NM_207348

2.43

  UGT1A6

NM_001072

2.25

  LRRC66

NM_001024611

2.20

  EXOC3L4

NM_001077594

1.95

  ANO7

NM_001001891

1.95

  GLYCTK

NM_145262

1.90

  CLEC10A

NM_182906

1.89

  FAM95B1

NR_026759

1.89

  LPIN3

NM_022896

1.87

Down-regulated protein-coding genes

  SERPINB3

NM_006919

-3.87

  SLC6A14

NM_007231

-3.51

  GAL

NM_015973

-2.50

  GJB4

NM_153212

-2.38

  IGHV1-58

ENST00000390628

-2.29

  CRYM

NM_001888

-2.28

  SLC26A4

NM_000441

-2.22

  DEFB103B

NM_018661

-2.22

  LAMC2

NM_005562

-2.20

  TUSC3

NM_178234

-2.02