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Table 6 Top 10 differentially expressed genes in inflamed Crohn’s disease versus inflamed ulcerative colitis

From: Transcriptomic landscape of lncRNAs in inflammatory bowel disease

Gene name Transcript FC
Up-regulated lncRNAs   
  FLJ42969 ENST00000514926.1 2.6
  AC007182.6 ENST00000455232.1 2.42
  RP11-542 M13.2 ENST00000599411.1 2.04
  RP11-399 F4.4 ENST00000453998.1 1.87
  FAM95B1 ENST00000455995.1 1.87
  RP3-395 M20.8 ENST00000432521.2 1.69
  RP3-395 M20.8 ENST00000448624.2 1.65
  OPLAH ENST00000426825.1 1.61
  OPLAH ENST00000534424.1 1.61
  SPPL2B ENST00000592738.1 1.59
Down-regulated lncRNAs   
  AL928742.12 ENST00000412518.1 -2.01
  RP11-444D3.1 ENST00000540811.1 -1.84
  AL928742.12 ENST00000427543.1 -1.8
  FAM25D ENST00000426412.2 -1.69
  RP11-274 N19.2 ENST00000515643.1 -1.64
  RP11-838 N2.4 ENST00000579007.1 -1.59
  RP11-279 F6.3 ENST00000558941.1 -1.57
  RP11-279 F6.3 ENST00000559212.1 -1.55
  LINC00524 ENST00000555860.1 -1.54
  VAV3-AS1 ENST00000438318.1 -1.52
Up-regulated protein-coding genes   
  C8G NM_000606 2.75
  SLC25A34 NM_207348 2.43
  UGT1A6 NM_001072 2.25
  LRRC66 NM_001024611 2.20
  EXOC3L4 NM_001077594 1.95
  ANO7 NM_001001891 1.95
  GLYCTK NM_145262 1.90
  CLEC10A NM_182906 1.89
  FAM95B1 NR_026759 1.89
  LPIN3 NM_022896 1.87
Down-regulated protein-coding genes   
  SERPINB3 NM_006919 -3.87
  SLC6A14 NM_007231 -3.51
  GAL NM_015973 -2.50
  GJB4 NM_153212 -2.38
  IGHV1-58 ENST00000390628 -2.29
  CRYM NM_001888 -2.28
  SLC26A4 NM_000441 -2.22
  DEFB103B NM_018661 -2.22
  LAMC2 NM_005562 -2.20
  TUSC3 NM_178234 -2.02
  1. Top 10 up- and down-regulated lncRNAs and protein-coding genes in iCD versus iUC. The log2 fold change is denoted as FC.