Fig. 3
From: Inferring pathway dysregulation in cancers from multiple types of omic data
Correlation between GSOA output for microarray and RNA-Sequencing data. We used GSOA to compared HER2+ breast cancer samples against HER2− samples from TCGA for either microarrays or RNA-Sequencing data. GSOA output values correlated strongly for a) AUC scores and b) P values. Spearman correlation coefficients were used to quantify similarity in ranks between the values