Table 2 WINGS datasets for our clinical omics use-case
From: Use of semantic workflows to enhance transparency and reproducibility in clinical omics
Dataset | Description |
|---|---|
GeneTrails_Genes | List of genes on the GeneTrails Solid Tumor Panel® |
COSMICSubset | GeneTrails specific subset of COSMIC |
SNPSubset | GeneTrails specific subset of dbSNP |
Patient_Called_DNA_Variant_File | Identified DNA variants from a patient’s tumor sample |
Queried_COSMIC_Result | Queried COSMIC annotation specific to a Patient_Called_DNA_Variant_File |
Queried_SNP_Result | Queried dbSNP annotation specific to a Patient_Called_DNA_Variant_File |
Transcript_File | Transcripts of interest from GeneTrails_Genes |
Predicted_Protein_Consequence | Predicted consequence(s) specific to a Patient_Called_DNA_Variant_File |
In_House_Curation_of_DNA_Variants | Manually curated information on sequence characteristics of previously identified DNA variants |
Final_Annotation_of_DNA_Variants | Coalesced annotation information from the workflow specific to a Patient_Called_DNA_Variant_File |