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Table 2 WINGS datasets for our clinical omics use-case

From: Use of semantic workflows to enhance transparency and reproducibility in clinical omics

Dataset Description
GeneTrails_Genes List of genes on the GeneTrails Solid Tumor Panel®
COSMICSubset GeneTrails specific subset of COSMIC
SNPSubset GeneTrails specific subset of dbSNP
Patient_Called_DNA_Variant_File Identified DNA variants from a patient’s tumor sample
Queried_COSMIC_Result Queried COSMIC annotation specific to a Patient_Called_DNA_Variant_File
Queried_SNP_Result Queried dbSNP annotation specific to a Patient_Called_DNA_Variant_File
Transcript_File Transcripts of interest from GeneTrails_Genes
Predicted_Protein_Consequence Predicted consequence(s) specific to a Patient_Called_DNA_Variant_File
In_House_Curation_of_DNA_Variants Manually curated information on sequence characteristics of previously identified DNA variants
Final_Annotation_of_DNA_Variants Coalesced annotation information from the workflow specific to a Patient_Called_DNA_Variant_File