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Table 3 Genetic annotations for 62 sites selected by recursive Random Forest

From: DNA methylation loci associated with atopy and high serum IgE: a genome-wide application of recursive Random Forest feature selection

CpG Site Chr Coordinate Associated genes Gene region CpG island
cg00854799 1 2336398 PEX10; RER1 3′UTR North Shelf
cg09249800 1 6341287 ACOT7 Body Island
cg06824199 1 47157809 KIAA0494 Body
cg17594242 1 115654782
cg09332506 1 160309220 COPA Body North Shelf
cg01847596 2 95660093 North Shelf
cg07880854 2 112895559 FBLN7 TSS1500 North Shore
cg13168187 2 159523681 PKP4 Body
cg01203365 2 217291500 SMARCAL1 Body
cg27468224 4 55031503
cg11372831 4 57303157 PAICS; PPAT Body; TSS1500 South Shore
cg03553407 4 148863880 ARHGAP10 Body
cg00528600 5 61699751 DIMT1L TSS200 Island
cg04085542 5 93414338 FAM172A Body; 5′UTR
cg05560165 5 133450315 TCF7 TSS1500 Island
cg14322298 6 10585683 GCNT2 Body; TSS1500
cg03131171 6 37616686 MDGA1 Body North Shore
cg00155310 6 50814011 TFAP2B 3′UTR South Shore
cg02201050 7 22759083
cg02366798 7 27237154 HOXA13 3′UTR North Shore
cg09570585 7 138916241 UBN2 1stExon Island
cg05652668 7 139044807 LUC7L2 1stExon; 5′′UTR Island
cg07970948 7 149543165 ZNF862 Body
cg24836822 7 150648840 KCNH2 Body Island
cg05104993 8 11973223 FAM66D TSS200 North Shore
cg06816054 8 27695695 PBK TSS1500 South Shore
cg04775941 8 141474793 Island
cg13713293 9 841636 DMRT1 TSS200 Island
cg25854298 10 73936754 ASCC1 Body
cg03468115 10 76852752
cg23527183 10 95253833 North Shelf
cg08397758 10 100174853 PYROXD2 1stExon
cg06851336 10 104678166 CNNM2 1stExon; 5′UTR Island
cg24077454 10 119134782 PDZD8 1stExon; 5′UTR Island
cg14574726 11 809735 RPLP2 TSS200 Island
cg12819873 11 57157632 PRG2 5′UTR
cg13233042 11 63432489 ATL3 Body
cg04162999 11 64120313 CCDC88B Body
cg10016610 11 124735994 ROBO3 Body Island
cg07908654 13 41631052 North Shelf
cg09635874 13 98952518 FARP1 Body
cg11182893 13 114842103 RASA3 Body South Shore
cg14478663 14 51643693
cg15281774 15 73661908 HCN4 TSS1500 Island
cg01777765 16 1823191 MRPS34; NME3; EME2 TSS200; TSS1500 Island
cg05048002 16 30077837 ALDOA 5'UTR Island
cg04342090 16 30670571 Island
cg02775369 16 56316221 GNAO1 Body
cg01190915 16 56642761 MT2A Body South Shore
cg04983687 16 88558223 ZFPM1 Body Island
cg27202913 16 89258862 CDH15 Body Island
cg01097406 16 89675127
cg04798929 17 8287246 RPL26 TSS1500 Island
cg17549513 17 9694789 DHRS7C TSS200
cg07765167 17 36451845 MRPL45 TSS1500 North Shore
cg27469152 17 56282313 EPX 3′UTR
cg17041511 17 61509620 North Shelf
cg12819826 19 10216676 PPAN; PPAN–P2RY11 TSS1500; TSS1500 North Shore
cg12578575 19 54135140 DPRX TSS200
cg11569718 19 58905979 RPS5 Body North Shore
cg13197551 20 60709957 LSM14B 3′UTR
cg17971837 22 37215996 PVALB TSS1500 South Shelf
  1. Abbreviations: Chr Chromosome number, CpG cytosine–phosphate–guanineIgE Immunoglobulin E, IOW Isle of Wight cohort, TSS Transcription Start Site, UTR untranslated region
  2. Coordinate: Location of the CpG site within each chromosome, via genome build 37