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Open Access

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

  • Alexander L. Greninger1, 2,
  • Samia N. Naccache1, 2,
  • Scot Federman1, 2,
  • Guixia Yu1, 2,
  • Placide Mbala3, 6,
  • Vanessa Bres4,
  • Doug Stryke1, 2,
  • Jerome Bouquet1, 2,
  • Sneha Somasekar1, 2,
  • Jeffrey M. Linnen4,
  • Roger Dodd5,
  • Prime Mulembakani6,
  • Bradley S. Schneider6,
  • Jean-Jacques Muyembe-Tamfum3,
  • Susan L. Stramer5 and
  • Charles Y. Chiu1, 2, 7Email author
Contributed equally
Genome Medicine20157:99

https://doi.org/10.1186/s13073-015-0220-9

Received: 12 June 2015

Accepted: 3 September 2015

Published: 29 September 2015

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Authors’ Affiliations

(1)
Department of Laboratory Medicine, University of California
(2)
UCSF-Abbott Viral Diagnostics and Discovery Center
(3)
Institut National de Recherche Biomédicale
(4)
Hologic, Inc
(5)
American Red Cross
(6)
Metabiota, Inc
(7)
Department of Medicine, Division of Infectious Diseases, University of California

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