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Table 1 SNV and IS event summary

From: Genome dynamics of multidrug-resistant Acinetobacter baumannii during infection and treatment

SNV

Intergenica

Synonymous

Non-synonymous

NS/(N + S)

 Isolate-specific

30 (16)

36

123

0.77

 Patient-restricted

2 (7)

1

28

0.97

 Patient-specific

58 (15)

83

237

0.74

 Population-levelb

10,709 (9)

85,865

19,190

0.18

ISAba1c

Overexpressed

Loss of function

Neutral

Total

 Isolate-specific

8 (33)

13 (54)

3 (13)

24

 Patient-restricted

2 (67)

0

1 (33)

3

 Patient specific

8 (32)

10 (40)

7 (28)

25

 Population-level

13 (15)

50 (60)

21 (25)

84

  1. aValues in parentheses are the percentage of SNVs that are intergenic
  2. bSummary from kSNP output analyzing the 136 longitudinal isolates, and UHHS and public genomes
  3. cValues in parentheses are the percentage of IS events in each category