Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Table 2 SV phasing results for SVs in the left metastasis in the region surrounding FGFR2

SV ID	SV breakpoints	Number of unique molecules in breakpoint window	SV breakpoint-spanning molecules	Number of molecules shared between SVs	Phase block coordinates	Number of molecules assigned to haplotype	Molecule support for haplotype assignment
SV ID	SV breakpoints	Number of unique molecules in breakpoint window	SV breakpoint-spanning molecules	Number of molecules shared between SVs	Phase block coordinates	Number of molecules assigned to haplotype	Hap1	Hap2
DUP1	122465822	2176	49	0	122189628 – 125868860	42	41/42 (0.98)	1/42 (0.02)
DUP1	123486940	3542	49	0		42	41/42 (0.98)	1/42 (0.02)
DUP2	122946842	3051	81	28		60	59/60 (0.98)	1/60 (0.02)
DUP2	123782540	2588	81			60	59/60 (0.98)	1/60 (0.02)
DEL1	122959061	3198	73			21	21/21 (1.0)	0/21 (0)
DEL1	123242792	4216	73			21	21/21 (1.0)	0/21 (0)
INV	123237230	4230	83	2		58	37/58 (0.64)	21/58 (0.36)
INV	123563811	2635	83			58	37/58 (0.64)	21/58 (0.36)
DEL2	123555077	2721	71			63	58/63 (0.92)	5/63 (0.08)
DEL2	123709721	2423	71			63	58/63 (0.92)	5/63 (0.08)

ISSN: 1756-994X