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Table 2 SV phasing results for SVs in the left metastasis in the region surrounding FGFR2

From: Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

SV ID SV breakpoints Number of unique molecules in breakpoint window SV breakpoint-spanning molecules Number of molecules shared between SVs Phase block coordinates Number of molecules assigned to haplotype Molecule support for haplotype assignment
Hap1 Hap2
DUP1 122465822 2176 49 0 122189628 – 125868860 42 41/42 (0.98) 1/42 (0.02)
123486940 3542
DUP2 122946842 3051 81 28 60 59/60 (0.98) 1/60 (0.02)
123782540 2588
DEL1 122959061 3198 73 21 21/21 (1.0) 0/21 (0)
123242792 4216
INV 123237230 4230 83 2 58 37/58 (0.64) 21/58 (0.36)
123563811 2635
DEL2 123555077 2721 71 63 58/63 (0.92) 5/63 (0.08)
123709721 2423