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Table 2 List of SNPs used to identify patient-derived xenografts

From: Evolving neoantigen profiles in colorectal cancers with DNA repair defects

Probe SNP GENE Chr Functional consequence
AMG_mid100
 rs11017876 [A\G] DOCK1 10:127402700 Intron variant
 rs1106334 [C\T]   8:70100576  
 rs1155741 [C\T] ITGA9 3:37585621 Intron variant
 rs11655512 [A\G] LOC339260 17:20948422 Intron variant
 rs11940551 [G\T]   4:27160856  
 rs1210110 [A\G] PRDM2 1:13770326 Intron variant
 rs1364054 [C\T] LINC00299 2:8038605 Intron variant
 rs1528601 [C\G]   16:51064516  
 rs161792 [A\T] LOC101928166 3:152181915 Intron variant
 rs17272796 [C\T] PLCL2 3:17035776 Intron variant
 rs242076 [C\T] SYN3 - TIMP3 22:32833844 Intron variant
 rs4775699 [C\T] SEMA6D 15:47581352 Intron variant
 rs4793172 [A\T] DCAKD 17:45054112 Intron variant
 rs4905366 [A\G]   14:95636762  
 rs6603251 [C\T] PPP2R3B Y:359845 Intron variant
 rs6734275 [A\G] LOC105374785 2:67014042 Intron variant
 rs685449 [A\T] RGS17 6:153023396 Intron variant
 rs7555566 [A\G] KAZN 1:14478378 Intron variant
 rs7584993 [A\C]   2:222981224  
 rs7808249 [A\G] CROT 7:87354399 Intron variant
 rs9293511 [C\T] LOC105379072 5:89120537 Intron variant
 rs9352613 [A\G]   6:78714716  
 rs9572094 [C\T] LOC105370159 13:34678745 Intron variant