Evolving neoantigen profiles in colorectal cancers with DNA repair defects

Table 2 List of SNPs used to identify patient-derived xenografts

Probe	SNP	GENE	Chr	Functional consequence
AMG_mid100
rs11017876	[A\G]	DOCK1	10:127402700	Intron variant
rs1106334	[C\T]		8:70100576
rs1155741	[C\T]	ITGA9	3:37585621	Intron variant
rs11655512	[A\G]	LOC339260	17:20948422	Intron variant
rs11940551	[G\T]		4:27160856
rs1210110	[A\G]	PRDM2	1:13770326	Intron variant
rs1364054	[C\T]	LINC00299	2:8038605	Intron variant
rs1528601	[C\G]		16:51064516
rs161792	[A\T]	LOC101928166	3:152181915	Intron variant
rs17272796	[C\T]	PLCL2	3:17035776	Intron variant
rs242076	[C\T]	SYN3 - TIMP3	22:32833844	Intron variant
rs4775699	[C\T]	SEMA6D	15:47581352	Intron variant
rs4793172	[A\T]	DCAKD	17:45054112	Intron variant
rs4905366	[A\G]		14:95636762
rs6603251	[C\T]	PPP2R3B	Y:359845	Intron variant
rs6734275	[A\G]	LOC105374785	2:67014042	Intron variant
rs685449	[A\T]	RGS17	6:153023396	Intron variant
rs7555566	[A\G]	KAZN	1:14478378	Intron variant
rs7584993	[A\C]		2:222981224
rs7808249	[A\G]	CROT	7:87354399	Intron variant
rs9293511	[C\T]	LOC105379072	5:89120537	Intron variant
rs9352613	[A\G]		6:78714716
rs9572094	[C\T]	LOC105370159	13:34678745	Intron variant