Skip to main content

Table 2 List of SNPs used to identify patient-derived xenografts

From: Evolving neoantigen profiles in colorectal cancers with DNA repair defects

Probe

SNP

GENE

Chr

Functional consequence

AMG_mid100

 rs11017876

[A\G]

DOCK1

10:127402700

Intron variant

 rs1106334

[C\T]

 

8:70100576

 

 rs1155741

[C\T]

ITGA9

3:37585621

Intron variant

 rs11655512

[A\G]

LOC339260

17:20948422

Intron variant

 rs11940551

[G\T]

 

4:27160856

 

 rs1210110

[A\G]

PRDM2

1:13770326

Intron variant

 rs1364054

[C\T]

LINC00299

2:8038605

Intron variant

 rs1528601

[C\G]

 

16:51064516

 

 rs161792

[A\T]

LOC101928166

3:152181915

Intron variant

 rs17272796

[C\T]

PLCL2

3:17035776

Intron variant

 rs242076

[C\T]

SYN3 - TIMP3

22:32833844

Intron variant

 rs4775699

[C\T]

SEMA6D

15:47581352

Intron variant

 rs4793172

[A\T]

DCAKD

17:45054112

Intron variant

 rs4905366

[A\G]

 

14:95636762

 

 rs6603251

[C\T]

PPP2R3B

Y:359845

Intron variant

 rs6734275

[A\G]

LOC105374785

2:67014042

Intron variant

 rs685449

[A\T]

RGS17

6:153023396

Intron variant

 rs7555566

[A\G]

KAZN

1:14478378

Intron variant

 rs7584993

[A\C]

 

2:222981224

 

 rs7808249

[A\G]

CROT

7:87354399

Intron variant

 rs9293511

[C\T]

LOC105379072

5:89120537

Intron variant

 rs9352613

[A\G]

 

6:78714716

 

 rs9572094

[C\T]

LOC105370159

13:34678745

Intron variant