Table 2 MCPyV integration sites
From: Clinical and molecular characterization of virus-positive and virus-negative Merkel cell carcinoma
ID | Off-target reads | ViroPanel reads | MCPyV coverage | Normalized coverage | Integration site(s) |
|---|---|---|---|---|---|
MCC001 | 0 | 7562 | 0.85 | 0.27197 | 3:181965781,181965770 |
MCC002 | 0 | 74 | 0.61 | 0.00013 | Â |
MCC003 | 4 | Â | Â | Â | Â |
MCC004 | 0 | Â | Â | Â | Â |
MCC005 | 4 | 87,721 | 0.77 | 5.60786 | 5:20753360,33939328 |
MCC006 | 4 | 37,150 | 0.77 | 2.50159 | 2:196945370,196945371 |
MCC007 | 0 | 971 | 0.97 | 0.00317 | Â |
MCC008 | 0 | 69,634 | 1.00 | 1.73052 | 5:149618981,149709442 |
MCC009 | 0 | 3 | 0.05 | 0.00004 | Â |
MCC010 | 4 | 111,147 | 1.00 | 5.37166 | 1:116791739,117025123 |
MCC011 | 0 | 212 | 0.87 | 0.00039 | Â |
MCC012 | 0 | Â | Â | Â | Â |
MCC013 | 78 | 113,184 | 1.00 | 5.32306 | 6:36192882,36282634 |
MCC014 | 0 | 21,307 | 0.70 | 1.45712 | 5:138420218,138511276 |
MCC015 | 0 | 177 | 0.77 | 0.00036 | Â |
MCC016 | 0 | Â | Â | Â | Â |
MCC017 | 0 | Â | Â | Â | Â |
MCC018 | 2 | Â | Â | Â | Â |
MCC019 | 0 | 13,343 | 0.50 | 0.83000 | 10:63999700,64000021 |
MCC020 | 0 | 120 | 0.83 | 0.00029 | Â |
MCC021 | 0 | 8 | 0.07 | 0.00004 | Â |
MCC022 | 0 | 22,715 | 0.93 | 0.72455 | 16:83581326,83890305 |
MCC023 | 0 | 1 | 0.02 | 0.00002 | Â |
MCC024 | 8 | 521,049 | 1.00 | 24.81107 | Â |
MCC025 | 0 | Â | Â | Â | Â |
MCC026 | 0 | 48,346 | 0.99 | 2.25473 | 9:76893837,77023700; 16:47914233,48036152; 18:1561377,1668866 |
MCC027 | 0 | 17,748 | 0.36 | 1.84619 | 1:3582621,4107851 |
MCC028 | 0 | 0 | 0.00 | 0.00000 | Â |
MCC029 | 0 | 8808 | 0.53 | 0.51872 | 2:206984157,206984156 |
MCC030 | 0 | 102 | 0.77 | 0.00026 | Â |
MCC031 | 0 | Â | Â | Â | Â |
MCC032 | 14 | Â | Â | Â | Â |
MCC033 | 0 | Â | Â | Â | Â |
MCC034 | 0 | 119 | 0.76 | 0.00026 | Â |
MCC035 | 0 | 5 | 0.08 | 0.00002 | Â |
MCC036 | 0 | 21,479 | 0.47 | 1.21591 | 15:57507670,57507677 |
MCC037 | 194 | 21,095,751 | 1.00 | 511.66883 | Â |
MCC038 | 0 | Â | Â | Â | Â |
MCC039 | 0 | Â | Â | Â | Â |
MCC040 | 0 | 181,807 | 0.96 | 7.46100 | 8:28408988,28457320 |
MCC041 | 0 | 12,858 | 0.74 | 0.78054 | 9:111568335,111579165 |
MCC042 | 0 | 75,177 | 1.00 | 1.99230 | 1:116797448,116797523 |
MCC043 | 1 | 31,969 | 0.48 | 3.14034 | 9:13451094,13451103 |
MCC044 | 0 | 35,415 | 1.00 | 1.39092 | 11:79113528,79113529 |
MCC045 | 4 | Â | Â | Â | Â |
MCC046 | 0 | 2 | 0.04 | 0.00003 | Â |
MCC047 | 0 | 6824 | 0.40 | 0.60372 | Â |
MCC048 | 0 | 2 | 0.04 | 0.00002 | Â |
MCC049 | 0 | 1 | 0.02 | 0.00003 | Â |
MCC050 | 0 | 34,047 | 0.48 | 2.10949 | 6:51146411,51146421 |
MCC051 | 7 | Â | Â | Â | Â |
MCC052 | 8 | 74,199 | 1.00 | 2.06071 | 8:113896842,114256794 |
MCC053 | 0 | Â | Â | Â | Â |
MCC054 | 0 | 103,352 | 1.00 | 2.95039 | 5:8556313,34193826 (34349919–34349456) |
MCC055 | 0 | 265 | 0.96 | 0.00052 | Â |
MCC056 | 6 | 85,232 | 0.80 | 5.65339 | 6:9659029,9659034 |
MCC057 | 0 | 7 | 0.09 | 0.00004 | Â |
MCC058 | 3 | Â | Â | Â | Â |
MCC059 | 0 | 1 | 0.02 | 0.00003 | Â |
MCC060 | 0 | Â | Â | Â | Â |
MCC061 | 7 | Â | Â | Â | Â |
MCC062 | 0 | 10,735 | 0.38 | 0.66668 | 7:121478017,121478033 |
MCC063 | 0 | 4 | 0.07 | 0.00001 | Â |
MCC064 | 0 | Â | Â | Â | Â |
MCC065 | 0 | Â | Â | Â | Â |
MCC066 | 0 | Â | Â | Â | Â |
MCC067 | 10 | Â | Â | Â | Â |
MCC068 | 3 | Â | Â | Â | Â |
MCC069 | 0 | 25,483 | 0.55 | 1.31799 | 1:76825442,76826185 |
MCC070 | 0 | 5 | 0.09 | 0.00001 | Â |
MCC071 | 0 | 19,543 | 0.47 | 1.61800 | 7:1330002,1593035 |