Fig. 1
From: PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
PathoSPOT comparative genome analysis of 221 MRSA isolates. a Overview of the PathoSPOT whole-genome comparison framework. b Maximum-likelihood phylogenetic trees produced from core-genome SNVs identified from Parsnp whole-genome alignments of 4 clusters identified at a Mash score threshold of 0.02. Trees are annotated with MLST and SCCmec information (key is shown on the right) and clonal complexes (bottom). Scale bars indicating the number of substitutions per site in the phylogeny and the percentage of core-genome coverage among all sequences are shown at the center of each tree