Table 1 Sequencing reads across patient timeline for UK2 and also comparative data from selected EMLab patients (IDs 413, 753, 578, 462 and 351).
Plasma | Blood | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Day 1 | Day 4 | Day 5 | Day 6 | Day 7 | Day 8 | Day 9 | Day 10 | Day 11 | Day 12 | |
Total reads | 13,431,416 | 3,833,134 | 2,645,578 | 2,177,628 | 5,431,570 | 5,705,462 | 1,864,628 | 3,049,104 | 1,481,988 | 4,342,832 |
Reads mapped to EBOV | 595 (0.00%) | 54,856 (1.43%) | 1,037,421 (39.21%) | 1,198,007 (55.01%) | 914,490 (16.84%) | 692,250 (12.13%) | 116,405 (6.24%) | 65,188 (2.14%) | 21,352 (1.44%) | 25,429 (0.59%) |
Reads mapped to human | 12,555,014 (93.47%) | 1,436,018 (37.5%) | 862,860 (32.6%) | 519,467 (23.9%) | 3,116,172 (57.4%) | 3,487,829 (61.1%) | 1,239,462 (66.5%) | 1,980,054 (64.9%) | 916,534 (61.8%) | 2,736,038 (63%) |
Plasma Month 10 | CSF Month 10 071015 | CSF Month 10 081015 | EMLab Patient ID | 413 | 753 | 578 | 462 | 351 | ||
Total reads | 14,377,682 | 11,626,808 | 12,774,412 | Total reads | 56,565,350 | 6,398,890 | 78,423,238 | 47,990,570 | 75,648,710 | |
Reads mapped to EBOV | 180 (0.00%) | 9227 (0.08%) | 10,200 (0.08%) | Reads mapped to EBOV | 20,471,809 (36.19%) | 1,099,593 (17.18%) | 7,544,790 (9.62%) | 4,469,920 (9.31%) | 5,525,548 (7.30%) | |
Reads mapped to human | 13,590,746 (94.53%) | 11,073,317 (95.24%) | 12,164,725 (95.23%) | Reads mapped to human | 33,939,691 (60.00%) | 4,853,256 (75.85%) | 69,922,793 (89.16%) | 42,888,768 (89.37%) | 68,391,308 (90.41%) | |