Table 2 Average GC-content and coverage breadth of sequenced samples
From: Single-cell sequencing of the small and AT-skewed genome of malaria parasites
Reads | Sample name (#) | Average of mean coverage (X) | Average GC content | Average coverage breadth | ||
|---|---|---|---|---|---|---|
Whole genome | Genic regions | Intergenic regions | ||||
All mappable reads | EOM (13) | 37.54 | 21.4% | 57.9% | 78.0% | 27.8% |
LOM (10) | 43.10 | 22.4% | 57.3% | 79.0% | 25.0% | |
COM (2) | 9.54 | 20.7% | 48.0% | 67.7% | 18.5% | |
ENM (1) | 1.47 | 25.0% | 23.0% | 34.4% | 6.1% | |
LNM (1) | 20.43 | 24.3% | 47.4% | 67.9% | 16.9% | |
Dd2_bulk (1) | 75.83 | 18.9% | 96.1% | 97.0% | 94.9% | |
Clinical_bulk (1) | 0.03 | 19.7% | 0.3% | 0.3% | 0.2% | |
Down-sampled* | EOM (13) | 1.66 | 21.4% | 30.9% | 47.2% | 6.7% |
LOM (10) | 1.69 | 22.4% | 32.1% | 49.8% | 5.8% | |
COM (2) | 1.66 | 20.8% | 31.1% | 47.0% | 7.5% | |
ENM (1) | 1.33 | 25.2% | 21.7% | 32.9% | 5.0% | |
LNM (1) | 1.62 | 24.3% | 26.2% | 40.3% | 5.1% | |
Dd2_bulk (1) | 1.85 | 18.8% | 76.8% | 80.6% | 71.2% | |