|
1) Output
| | | |
|
Type
|
Heatmap and barplot
|
Overview tables
|
Overview table
|
|
Download
|
All intermediate and output files (JSON)
|
Yes (CSV)
|
Yes (JSON)
|
|
2) Genotypic predictions
|
Probability
|
Binary
|
Binary
|
|
3) Error rate
|
Yes
|
N.A.
|
N.A.
|
|
4) Resistance variants
|
Variant by drug
|
Variant by drug incl. fraction of mutant/wild-type allele
|
Variant by drug incl. depth of mutant and wild-type alleles
|
|
5) Unknown variants
|
Yes, in all genes
|
Yes, in candidate resistance genes
|
No
|
|
6) M. tuberculosis Lineage
| | | |
|
Main lineage
|
Yes
|
Yes
|
Yes
|
|
Sublineage
|
Yes
|
Yes
|
Yes
|
|
Typing scheme
|
Yes
|
No
|
No
|
|
7) Quality metrics
|
Trimming and contamination report
|
No. of reads, Percentage of reads mapped
|
No
|
