Fig. 5

Differentially abundant MetaCyc pathways. HUMAnN2-derived genes were collapsed into functional pathways using MinPath and analyzed for differential expression. Of the 2251 analyzed pathways, 17 were significant (FDR < 0.05) and are shown in the figure. Bar plot shows the median RPK values found within each group with a difference in the median coverage presented as a dot plot with associated 95% confidence intervals