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Table 1 AIRR-seq TCR data sets (DS) analyzed in this study

From: T cell receptor beta germline variability is revealed by inference from repertoire data

Data set Cohort # of individuals # of samples Sequencing protocol UMI Helix Accession Citation
DS1 Hepatitis 28 28 5 RACE + RNA ENA:PRJEB28370 Eliyahu et al. [29]
  C Virus    (full-length)     
  (HCV)        
DS2 - 25 25 10x Genomics (full-length) + RNA https://www.10xgenomics.com/ resources/datasets 10x Genomics [32]
        EGA:EGAS00001003449 Wen et al. [33]
        GEO:GSE145926 Liao et al. [34]
DS3 Cancer 219 240 BIOMED-2 - DNA ENA:PRJEB33490 Simnica et al. [30]
DS4 Cytomegalovirus 786 786 Adaptive Biotechnologies - DNA https://doi.org/10.21417/B7001Z Emerson et al. [31]
  (CMV)