Fig. 1

Schematic representation of the three main steps of ReporTree pipeline. Blue background highlights the alternative input types, green background highlights the alternative clustering modules, and pink background highlights the main outputs of ReporTree. Arrows indicate the alternative workflows for each input. Single asterisk, only output when a sequence alignment is provided. Double asterisks, exclusive output of MST and HC analysis. Triple asterisks, output of an optional step (comparing partitions) not represented in the figure