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Table 1 List of WGS analyses performed in CT26 samples. Sequencing features of BALB/c mouse strain, Mlh1+/+ and Mlh1-/- samples. The following data are described in the table: total number of sequenced reads, number of mapped reads on the reference genome, and whole genome median depth

From: Non-canonical antigens are the largest fraction of peptides presented by MHC class I in mismatch repair deficient murine colorectal cancer

Sample

Reads

Mapped

Median depth

BALB/c

1078015820

99.56%

105

CT26 Mlh1+/+

958072282

99.61%

91

CT26 Mlh1+/+ post BALB/c M1

877846209

99.66%

83

CT26 Mlh1+/+ post BALB/c M2

856369151

99.63%

80

CT26 Mlh1+/+ post BALB/c M3

1088138369

99.75%

103

CT26 Mlh1+/+post NOD-SCID M1

915507037

99.61%

85

CT26 Mlh1+/+post NOD-SCID M2

964605317

99.62%

92

CT26 Mlh1+/+post NOD-SCID M3

888087399

99.58%

82

CT26 Mlh1-/-

1083850382

99.71%

104

CT26 Mlh1-/- post BALB/c M2

996468559

99.59%

90

CT26 Mlh1-/- post BALB/c M6

1038671151

99.52%

94

CT26 Mlh1-/- post BALB/c M7

1089980019

99.63%

106

CT26 Mlh1-/- post NOD-SCID M5

1022739553

99.63%

100

CT26 Mlh1-/- post NOD-SCID M7

854313322

99.59%

81