Open Access

Erratum to: a SNP profiling panel for sample tracking in whole-exome sequencing studies

  • Reuben J Pengelly1,
  • Jane Gibson1,
  • Gaia Andreoletti1,
  • Andrew Collins1,
  • Christopher J Mattocks2 and
  • Sarah Ennis1Email author
Genome Medicine20157:44

https://doi.org/10.1186/s13073-015-0163-1

Received: 14 April 2015

Accepted: 16 April 2015

Published: 7 May 2015

The original article was published in Genome Medicine 2013 5:89

Abstract

?

This is an Erratum to Genome Medicine 2013, 5:89, highlighting an error in Table 1 of the original article. Please see related article: http://genomemedicine.com/content/5/9/89.

Erratum

It has come to our attention that there is an error in Table 1 of our article [1]. Within the ‘Alleles’ column, incorrect reference/alternate nucleotides have been given. This error is limited to this column, all other data and conclusions presented are correct. The corrected Table 1 is shown below.
Table 1

Optimised panel of identifying SNPs

Chromosome

Position a

dbSNP rsID

Gene

Alleles

HapMap 3 AF

CEU

CHB

JPT

YRI

1

179520506

rs1410592

NPHS2

A/G

0.59

0.62

0.54

0.53

1

67861520

rs2229546

IL12RB2

A/C

0.64

0.36

0.44

0.58

2

169789016

rs497692

ABCB11

A/Gb

0.55

0.65

0.51

0.22

2

227896976

rs10203363

COL4A4

C/T

0.46

0.44

0.36

0.57

3

4403767

rs2819561

SUMF1

C/Tb

0.56

0.73

0.73

0.72

4

5749904

rs4688963

EVC

A/Gb

0.33

0.65

0.67

0.52

5

82834630

rs309557

VCAN

A/Gb

0.49

0.34

0.52

0.50

6

146755140

rs2942

GRM1

A/G

0.54

0.49

0.55

0.47

7

48450157

rs17548783

ABCA13

C/T

0.46

0.72

0.53

0.48

8

94935937

rs4735258

PDP1

C/T

0.40

0.64

0.66

0.46

9

100190780

rs1381532

TDRD7

C/Tb

0.48

0.59

0.50

0.58

10

100219314

rs10883099

HPSE2

A/G

0.52

0.52

0.53

0.62

11

16133413

rs4617548

SOX6

A/G

0.52

0.65

0.61

0.51

12

993930

rs7300444

WNK1

C/T

0.46

0.55

0.48

0.28

13

39433606

rs9532292

FREM2

A/G

0.29

0.41

0.44

0.54

14

50769717

rs2297995

L2HGDH

A/G

0.55

0.65

0.67

0.59

15

34528948

rs4577050

SLC12A6

A/G

0.68

0.75

0.63

0.32

16

70303580

rs2070203

AARS

C/Tb

0.53

0.28

0.51

0.49

17

71197748

rs1037256

COG1

A/G

0.50

0.67

0.65

0.56

18

21413869

rs9962023

LAMA3

C/T

0.67

0.81c

0.75

0.51

19

10267077

rs2228611

DNMT1

A/Gb

0.47

0.73

0.56

0.48

20

6100088

rs10373

FERMT1

C/Tb

0.54

0.31

0.35

0.58

21

44323590

rs4148973

NDUFV3

G/T

0.65

0.33

0.38

0.73

22

21141300

rs4675

SERPIND1

C/T

0.46

0.62

0.51

0.57

aPosition as defined in genome reference assembly GRCh37 (hg19).

bSNP alleles are defined on the negative strand to be consistent with dbSNP.

cAF marginally outside target range for candidate selection. Selected due to paucity of candidates on chromosome 18.

Notes

Authors’ Affiliations

(1)
Human Genetics and Genomic Medicine, Faculty of Medicine, University of Southampton
(2)
National Genetics Reference Laboratory (Wessex), Salisbury District Hospital

Reference

  1. Pengelly RJ, Gibson J, Andreoletti G, Collins A, Mattocks CJ, Ennis S. A SNP profiling panel for sample tracking in whole-exome sequencing studies. Genome Med. 2013;5:89.View ArticlePubMed CentralPubMedGoogle Scholar

Copyright

© Pengelly et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Advertisement