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Fig. 3 | Genome Medicine

Fig. 3

From: Low coverage whole genome sequencing enables accurate assessment of common variants and calculation of genome-wide polygenic scores

Fig. 3

Correlation of GPSs between genotyping array and lcWGS in the technical concordance cohort. a GPSCAD calculated using lcWGS was highly correlated (r2 = 0.98) with those calculated using genotyping array (n = 182). b GPSBC calculated using lcWGS was highly correlated (r2 = 0.93) with those calculated using genotyping array (n = 182). c GPSAF was highly correlated (r2 = 0.97) with those calculated using genotyping arrays (n = 182). x-axis is the raw GPS calculated from the genotyping array, and y-axis is the raw GPS calculated from the lcWGS data; raw GPS values are unitless. lcWGS low coverage whole genome sequencing; GPS, genome-wide polygenic score; CAD, coronary artery disease; BC, breast cancer; AF, atrial fibrillation

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Genome Medicine

ISSN: 1756-994X

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